This documentation targets the development Catalog API.
Data Sources Index
Catalog edges often reference source files viafiles_fileset. Each file below links to its portal record and file format specification (column definitions for the raw file).
See also Files & Filesets and Field lineage.
| File | Portal | Format | Format spec | Assay | Lab | Status |
|---|---|---|---|---|---|---|
| ENCFF001UVU | encode | bed | — | DNase-seq | Gregory Crawford, Duke | archived |
| ENCFF004PFU | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF006FTZ | encode | — | — | — | — | — |
| ENCFF034GOH | encode | — | — | — | — | — |
| ENCFF036LSB | encode | — | — | — | — | — |
| ENCFF073KUI | encode | — | — | — | — | — |
| ENCFF074MTS | encode | — | — | — | — | — |
| ENCFF078OEX | encode | txt | — | — | Hongkai Ji, Johns Hopkins | released |
| ENCFF079SJR | encode | — | — | — | — | — |
| ENCFF103XRK | encode | bed | — | — | J. Michael Cherry, Stanford | archived |
| ENCFF138UMI | encode | — | — | — | — | — |
| ENCFF167FJQ | encode | bed | — | — | Zhiping Weng, UMass | released |
| ENCFF176YAF | encode | — | — | — | — | — |
| ENCFF197HRR | encode | — | — | — | — | — |
| ENCFF201SDO | encode | — | — | — | — | — |
| ENCFF202FBA | encode | — | — | — | — | — |
| ENCFF213WPV | encode | — | — | — | — | — |
| ENCFF242PUG | encode | bigWig | — | TF ChIP-seq | ENCODE Processing Pipeline | released |
| ENCFF251XYE | encode | — | — | — | — | — |
| ENCFF257ABE | encode | — | — | — | — | — |
| ENCFF260UTE | encode | — | — | — | — | — |
| ENCFF268SIZ | encode | — | — | — | — | — |
| ENCFF270VCQ | encode | — | — | — | — | — |
| ENCFF299DOF | encode | — | — | — | — | — |
| ENCFF301DVM | encode | bigInteract | — | — | Jesse Engreitz, Stanford | released |
| ENCFF302YPU | encode | — | — | — | — | — |
| ENCFF314RKK | encode | — | — | — | — | — |
| ENCFF318HEA | encode | — | — | — | — | — |
| ENCFF343CVG | encode | — | — | — | — | — |
| ENCFF362RIQ | encode | — | — | — | — | — |
| ENCFF363HJR | encode | — | — | — | — | — |
| ENCFF383EUA | encode | — | — | — | — | — |
| ENCFF383YLO | encode | — | — | — | — | — |
| ENCFF390YHZ | encode | — | — | — | — | — |
| ENCFF393MCX | encode | — | — | — | — | — |
| ENCFF407GPD | encode | — | — | — | — | — |
| ENCFF420VPZ | encode | bed | — | — | Zhiping Weng, UMass | released |
| ENCFF425TLX | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF475FKV | encode | bed | — | MPRA | Nadav Ahituv, UCSF | released |
| ENCFF489MJA | encode | — | — | — | — | — |
| ENCFF537CGJ | encode | — | — | — | — | — |
| ENCFF546JWS | encode | — | — | — | — | — |
| ENCFF564XCH | encode | — | — | — | — | — |
| ENCFF573KXM | encode | — | — | — | — | — |
| ENCFF580TON | encode | — | — | — | — | — |
| ENCFF580UUB | encode | — | — | — | — | — |
| ENCFF584DPV | encode | — | — | — | — | — |
| ENCFF592OLR | encode | — | — | — | — | — |
| ENCFF612XCP | encode | — | — | — | — | — |
| ENCFF666WIM | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF679GQI | encode | — | — | — | — | — |
| ENCFF698USH | encode | — | — | — | — | — |
| ENCFF698ZKD | encode | — | — | — | — | — |
| ENCFF703ZEZ | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF705MLV | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF712SUP | encode | — | — | — | — | — |
| ENCFF727IKD | encode | — | — | — | — | — |
| ENCFF730TCG | encode | — | — | — | — | — |
| ENCFF751BIV | encode | — | — | — | — | — |
| ENCFF754QRZ | encode | — | — | — | — | — |
| ENCFF772YKX | encode | — | — | — | — | — |
| ENCFF778CUH | encode | — | — | — | — | — |
| ENCFF802FUV | encode | bed | — | MPRA | Nadav Ahituv, UCSF | released |
| ENCFF804CAK | encode | — | — | — | — | — |
| ENCFF808DHV | encode | bed | — | — | Jesse Engreitz, Stanford | released |
| ENCFF822SZV | encode | — | — | — | — | — |
| ENCFF843HTC | encode | — | — | — | — | — |
| ENCFF888NZL | encode | — | — | — | — | — |
| ENCFF893FXX | encode | — | — | — | — | — |
| ENCFF910TJJ | encode | — | — | — | — | — |
| ENCFF958QJL | encode | — | — | — | — | — |
| ENCFF968BZL | encode | tsv | — | — | Jesse Engreitz, Stanford | released |
| ENCFF976SSI | encode | — | — | — | — | — |
| ENCFF984XCI | encode | — | — | — | — | — |
| ENCFF985UDL | encode | — | — | — | — | — |
| IGVFFI0005WRQP | igvf | — | — | — | — | — |
| IGVFFI0183ELIK | igvf | — | — | — | — | — |
| IGVFFI0206LUDV | igvf | — | — | — | — | — |
| IGVFFI0332UGDD | igvf | — | — | — | — | — |
| IGVFFI0402TNDW | igvf | — | — | — | — | — |
| IGVFFI0629IIQU | igvf | — | — | — | — | — |
| IGVFFI0719VRZV | igvf | — | — | — | — | — |
| IGVFFI0818FMCC | igvf | — | — | — | — | — |
| IGVFFI1165YVBA | igvf | — | — | — | — | — |
| IGVFFI1298JRGV | igvf | — | — | — | — | — |
| IGVFFI1309WDQG | igvf | — | — | — | — | — |
| IGVFFI1323RCIE | igvf | — | — | — | — | — |
| IGVFFI1336XWXJ | igvf | — | — | — | — | — |
| IGVFFI1361XVSO | igvf | — | — | — | — | — |
| IGVFFI1436TRIH | igvf | — | — | — | — | — |
| IGVFFI1626MMBD | igvf | — | — | — | — | — |
| IGVFFI1663LKVQ | igvf | — | — | — | — | — |
| IGVFFI1931RMNE | igvf | — | — | — | — | — |
| IGVFFI2014OOZP | igvf | — | — | — | — | — |
| IGVFFI2369NSDT | igvf | — | — | — | — | — |
| IGVFFI2574RDFO | igvf | — | — | — | — | — |
| IGVFFI2810SLAX | igvf | — | — | — | — | — |
| IGVFFI3063JRLI | igvf | — | — | — | — | — |
| IGVFFI3069QCRA | igvf | — | — | — | — | — |
| IGVFFI3125FMNW | igvf | — | — | — | — | — |
| IGVFFI3157HIUW | igvf | — | — | — | — | — |
| IGVFFI3321YNBP | igvf | — | — | — | — | — |
| IGVFFI3351LASN | igvf | — | — | — | — | — |
| IGVFFI3412RLDF | igvf | — | — | — | — | — |
| IGVFFI4012FKNC | igvf | — | — | — | — | — |
| IGVFFI4219OZTA | igvf | — | — | — | — | — |
| IGVFFI4235YTNW | igvf | — | — | — | — | — |
| IGVFFI4317VDGK | igvf | — | — | — | — | — |
| IGVFFI4594QVDO | igvf | — | — | — | — | — |
| IGVFFI4731NANO | igvf | — | — | — | — | — |
| IGVFFI4892QCRR | igvf | — | — | — | — | — |
| IGVFFI4914OUJH | igvf | — | — | — | — | — |
| IGVFFI5135QZCS | igvf | — | — | — | — | — |
| IGVFFI5279OTVZ | igvf | — | — | — | — | — |
| IGVFFI5288RAAV | igvf | — | — | — | — | — |
| IGVFFI5749WPVK | igvf | — | — | — | — | — |
| IGVFFI6044LKYT | igvf | — | — | — | — | — |
| IGVFFI6182DQZM | igvf | — | — | — | — | — |
| IGVFFI6224HZMG | igvf | — | — | — | — | — |
| IGVFFI6537JARB | igvf | — | — | — | — | — |
| IGVFFI6807FCZT | igvf | — | — | — | — | — |
| IGVFFI6893ZOAA | igvf | — | — | — | — | — |
| IGVFFI6923RISY | igvf | — | — | — | — | — |
| IGVFFI6972ORPG | igvf | — | — | — | — | — |
| IGVFFI7115PAJX | igvf | — | — | — | — | — |
| IGVFFI7407XTPX | igvf | — | — | — | — | — |
| IGVFFI7781XWZY | igvf | — | — | — | — | — |
| IGVFFI7903VFKP | igvf | — | — | — | — | — |
| IGVFFI7985BGYI | igvf | — | — | — | — | — |
| IGVFFI8105TNNO | igvf | — | — | — | — | — |
| IGVFFI8207IHFY | igvf | — | — | — | — | — |
| IGVFFI8306RHIV | igvf | — | — | — | — | — |
| IGVFFI8551EYSR | igvf | — | — | — | — | — |
| IGVFFI8823UTCQ | igvf | — | — | — | — | — |
| IGVFFI8953HXRQ | igvf | — | — | — | — | — |
| IGVFFI8987JRZH | igvf | — | — | — | — | — |
| IGVFFI9499PJFU | igvf | — | — | — | — | — |
| IGVFFI9584UDAS | igvf | — | — | — | — | — |
| IGVFFI9602ILPC | igvf | — | — | — | — | — |
| IGVFFI9789TIWM | igvf | — | — | — | — | — |
| IGVFFI9974PZRX | igvf | — | — | — | — | — |